Structural analysis of G-DNA in solution: A combination of polarized and depolarized dynamic light scattering with hydrodynamic model calculations

Biochemistry. 1999 Sep 21;38(38):12416-23. doi: 10.1021/bi990750p.

Abstract

Specific intra- and intermolecular quadruplex conformations of model G-DNA oligonucleotides have been identified from their translational and rotational diffusion coefficients in aqueous solution. The transport properties were determined by polarized and depolarized dynamic light scattering. A comparison with hydrodynamic model calculations provides detailed information about the size and shape of the molecules and allows one to distinguish between alternative intra- and intermolecular association. The potential of this combination of methods to elucidate biomolecular structures in solution, to characterize conformational changes, and follow intermolecular interaction processes due to a response to external stimuli has been discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry*
  • G-Quadruplexes
  • Guanine / chemistry*
  • Light
  • Models, Molecular
  • Nucleic Acid Conformation*
  • Oligodeoxyribonucleotides / chemistry
  • Scattering, Radiation
  • Thermodynamics

Substances

  • Oligodeoxyribonucleotides
  • Guanine
  • DNA