PPMdb: a plant plasma membrane database

J Biotechnol. 2000 Mar 31;78(3):235-46. doi: 10.1016/s0168-1656(00)00200-5.

Abstract

PPMdb is a proteome database dedicated to proteins from plant plasma membranes. It provides comprehensive two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) maps, partial amino acid sequences and expression data. All this information is gathered and structured in a relational database, after being analyzed and annotated. PPMdb includes active links to related biological databases (EMBL, GenBank, GenPep, and SWISS-PROT and TrEMBL) as well as to MEDLINE abstracts. Information on specific protein spots can be displayed by clicking on the 2-D maps. In addition, users can query the database by accession number, protein name, pI and MW, and cellular location. Access to PPMdb is available at the following URL: http://sphinx.rug. ac.be:8080.

MeSH terms

  • Amino Acid Sequence
  • Biotechnology
  • Cell Membrane / chemistry
  • Databases, Factual*
  • Electrophoresis, Gel, Two-Dimensional
  • Gene Expression
  • Genome, Plant
  • Membrane Proteins / genetics
  • Membrane Proteins / isolation & purification
  • Molecular Sequence Data
  • Peptide Mapping
  • Plant Proteins / genetics*
  • Plant Proteins / isolation & purification*
  • Proteome / genetics
  • Proteome / isolation & purification
  • Sequence Alignment

Substances

  • Membrane Proteins
  • Plant Proteins
  • Proteome