Routine HLA-B genotyping with PCR-sequence-specific oligonucleotides (PCR-SSO) detects eight new alleles: B*0807, B*0809, B*1551, B*3529, B*3532, B*4025, B*5304 and B*5508

Tissue Antigens. 2000 Mar;55(3):266-70. doi: 10.1034/j.1399-0039.2000.550311.x.

Abstract

This paper describes eight new alleles (B*0807, B*0809, B*1551, B*3529, B*3532, B*4025, B*5304 and B*5508) that have been found by routine HLA-B genotyping with sequence-specific oligonucleotides (SSOs). All of the new alleles have variations which cause changes in residues that occur within antigen binding pockets and T-cell recognition sites of the antigen. The new polymorphisms within these new alleles may affect the nature and specificity of peptide binding and cause differential T-cell activation, which may have an affect in transplantation.

MeSH terms

  • Alleles*
  • Base Sequence
  • DNA, Complementary
  • Genotype
  • HLA Antigens / genetics
  • HLA-B Antigens / classification
  • HLA-B Antigens / genetics*
  • HLA-B15 Antigen
  • HLA-B35 Antigen / genetics
  • HLA-B40 Antigen
  • HLA-B8 Antigen / genetics
  • Humans
  • Molecular Sequence Data
  • Oligonucleotide Probes
  • Polymerase Chain Reaction / methods

Substances

  • DNA, Complementary
  • HLA Antigens
  • HLA-B Antigens
  • HLA-B15 Antigen
  • HLA-B35 Antigen
  • HLA-B40 Antigen
  • HLA-B53 antigen
  • HLA-B55 antigen
  • HLA-B8 Antigen
  • Oligonucleotide Probes

Associated data

  • GENBANK/AF091343
  • GENBANK/AF091344
  • GENBANK/AF105226
  • GENBANK/AF117766
  • GENBANK/AF117767
  • GENBANK/AF117770
  • GENBANK/AF117771
  • GENBANK/AF117772
  • GENBANK/AF117773
  • GENBANK/AF127247
  • GENBANK/AF127248
  • GENBANK/AF134864
  • GENBANK/AF134865
  • GENBANK/AF134866
  • GENBANK/AF134867