Is a nitrogen atom an important pharmacophoric element in sigma ligand binding?

Bioorg Med Chem. 2000 Aug;8(8):2105-11. doi: 10.1016/s0968-0896(00)00148-6.

Abstract

A lingering question in sigma receptor ligand development is whether a nitrogen atom serves as an important pharmacophoric element in binding affinity. To address this question, we have synthesized several phenylalkylpiperidines and phenylalkylpiperazines and demonstrated that removal of the N atom from a typical phenylalkylpiperidine led to little or no binding to sigma receptors. In addition, where two N atoms occur in a compound, such as with phenylalkylpiperazines, the N atom on the longer alkyl chain appears to be more important. Thus, based on this study, the N atom is an important pharmacophoric element in the binding of phenylalkylpiperidines and phenylalkylpiperazines to sigma receptors.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Guinea Pigs
  • Kinetics
  • Ligands
  • Models, Biological
  • Molecular Structure
  • Nitrogen / chemistry*
  • Piperazines / chemical synthesis
  • Piperazines / chemistry*
  • Piperazines / metabolism*
  • Piperidines / chemical synthesis
  • Piperidines / chemistry*
  • Piperidines / metabolism*
  • Radioligand Assay
  • Receptors, sigma / chemistry
  • Receptors, sigma / metabolism*
  • Structure-Activity Relationship

Substances

  • Ligands
  • Piperazines
  • Piperidines
  • Receptors, sigma
  • Nitrogen