Oxazolidinones mechanism of action: inhibition of the first peptide bond formation

J Biol Chem. 2001 Oct 5;276(40):37199-205. doi: 10.1074/jbc.M102966200. Epub 2001 Aug 1.

Abstract

Oxazolidinones are potent inhibitors of bacterial protein biosynthesis. Previous studies have demonstrated that this new class of antimicrobial agent blocks translation by inhibiting initiation complex formation, while post-initiation translation by polysomes and poly(U)-dependent translation is not a target for these compounds. We found that oxazolidinones inhibit translation of natural mRNA templates but have no significant effect on poly(A)-dependent translation. Here we show that various oxazolidinones inhibit ribosomal peptidyltransferase activity in the simple reaction of 70 S ribosomes using initiator-tRNA or N-protected CCA-Phe as a P-site substrate and puromycin as an A-site substrate. Steady-state kinetic analysis shows that oxazolidinones display a competitive inhibition pattern with respect to both the P-site and A-site substrates. This is consistent with a rapid equilibrium, ordered mechanism of the peptidyltransferase reaction, wherein binding of the A-site substrate can occur only after complex formation between peptidyltransferase and the P-site substrate. We propose that oxazolidinones inhibit bacterial protein biosynthesis by interfering with the binding of initiator fMet-tRNA(i)(Met) to the ribosomal peptidyltransferase P-site, which is vacant only prior to the formation of the first peptide bond.

MeSH terms

  • Drug Interactions
  • Escherichia coli / enzymology
  • Escherichia coli / metabolism
  • Kinetics
  • Oxazolidinones / pharmacology*
  • Peptide Biosynthesis / drug effects
  • Peptidyl Transferases / antagonists & inhibitors
  • Peptidyl Transferases / metabolism
  • Protein Biosynthesis / drug effects*
  • Protein Synthesis Inhibitors / pharmacology*
  • Puromycin / antagonists & inhibitors*
  • RNA, Messenger / drug effects
  • RNA, Messenger / genetics

Substances

  • Oxazolidinones
  • Protein Synthesis Inhibitors
  • RNA, Messenger
  • Puromycin
  • Peptidyl Transferases