Monomeric solution structure of the prototypical 'C' chemokine lymphotactin

Biochemistry. 2001 Oct 23;40(42):12486-96. doi: 10.1021/bi011106p.

Abstract

Lymphotactin, the sole identified member of the C class of chemokines, specifically attracts T lymphocytes and natural killer cells. This 93-residue protein lacks 2 of the 4 conserved cysteine residues characteristic of the other 3 classes of chemokines and possesses an extended carboxyl terminus, which is required for chemotactic activity. We have determined the three-dimensional solution structure of recombinant human lymphotactin by NMR spectroscopy. Under the conditions used for the structure determination, lymphotactin was predominantly monomeric; however, pulsed field gradient NMR self-diffusion measurements and analytical ultracentrifugation revealed evidence of dimer formation. Sequence-specific chemical shift assignments were determined through analysis of two- and three-dimensional NMR spectra of (15)N- and (13)C/(15)N-enriched protein samples. Input for the torsion angle dynamics calculations used in determining the structure included 1258 unique NOE-derived distance constraints and 60 dihedral angle constraints obtained from chemical-shift-based searching of a protein conformational database. The ensemble of 20 structures chosen to represent the structure had backbone and heavy atom rms deviations of 0.46 +/- 0.11 and 1.02 +/- 0.14 A, respectively. The results revealed that human lymphotactin adopts the conserved chemokine fold, which is characterized by a three-stranded antiparallel beta-sheet and a C-terminal alpha-helix. Two regions are dynamically disordered as evidenced by (1)H and (13)C chemical shifts and [(15)N]-(1)H NOEs: residues 1-9 of the amino terminus and residues 69-93 of the C-terminal extension. A functional role for the C-terminal extension, which is unique to lymphotactin, remains to be elucidated.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Chemokines, C / biosynthesis
  • Chemokines, C / chemistry*
  • Chemokines, C / isolation & purification
  • Chickens
  • Crystallography, X-Ray
  • Humans
  • Lymphokines / biosynthesis
  • Lymphokines / chemistry*
  • Lymphokines / isolation & purification
  • Macaca mulatta
  • Mice
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Structure, Secondary
  • Rats
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / isolation & purification
  • Sequence Homology, Amino Acid
  • Sialoglycoproteins / biosynthesis
  • Sialoglycoproteins / chemistry*
  • Sialoglycoproteins / isolation & purification
  • Solutions
  • Thermodynamics

Substances

  • Chemokines, C
  • Lymphokines
  • Recombinant Fusion Proteins
  • Sialoglycoproteins
  • Solutions
  • XCL1 protein, human
  • Xcl1 protein, mouse
  • lymphotactin

Associated data

  • PDB/1J8I
  • PDB/1J9O