Using disulfide bond engineering to study conformational changes in the beta'260-309 coiled-coil region of Escherichia coli RNA polymerase during sigma(70) binding

J Bacteriol. 2002 May;184(10):2634-41. doi: 10.1128/JB.184.10.2634-2641.2002.

Abstract

RNA polymerase of Escherichia coli is the sole enzyme responsible for mRNA synthesis in the cell. Upon binding of a sigma factor, the holoenzyme can direct transcription from specific promoter sequences. We have previously defined a region of the beta' subunit (beta'260-309, amino acids 260 to 309) which adopts a coiled-coil conformation shown to interact with sigma(70) both in vitro and in vivo. However, it was not known if the coiled-coil conformation was maintained upon binding to sigma(70). In this work, we engineered a disulfide bond within beta'240-309 that locks the beta' coiled-coil region in the coiled-coil conformation, and we show that this "locked" peptide is able to bind to sigma(70). We also show that the locked coiled-coil is capable of inducing a conformational change within sigma(70) that allows recognition of the -10 nontemplate strand of DNA. This suggests that the coiled-coil does not adopt a new conformation upon binding sigma(70) or upon recognition of the -10 nontemplate strand of DNA.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA-Directed RNA Polymerases / chemistry*
  • DNA-Directed RNA Polymerases / metabolism*
  • Disulfides / chemistry*
  • Electrophoretic Mobility Shift Assay
  • Escherichia coli Proteins / chemistry*
  • Oligonucleotides / metabolism
  • Protein Conformation
  • Protein Engineering*
  • Sigma Factor / metabolism*

Substances

  • Disulfides
  • Escherichia coli Proteins
  • Oligonucleotides
  • Sigma Factor
  • RNA polymerase sigma 70
  • DNA-Directed RNA Polymerases