The objective of this study is to determine the difference of the flow velocities of left and right cerebral arteries. We also studied the effect of head position to the cerebral arterial flow velocities. Eligible for inclusion in this study were 60 neonatal infants whose gestational age was 33.1+/-3.5 weeks and whose birth weight was 1793+/-613 g. The ultrasonographic examinations were performed in the first and second weeks after birth. In an axial scan through a temporal window, the Doppler sample volume was positioned at the center of the M1 portion of the middle cerebral artery and the flow velocity curve was detected. No statistical difference was seen in the flow velocities between the left and right middle cerebral arteries. However, the flow velocities in the upper side were significantly higher than those in the lower side. RI in the upper side was significantly smaller than that in the lower one. This change of flow velocities stabilized in 5 min after the head was turned upside down. The effect of head positioning to the intracranial blood flow must be considered when cerebral ultrasonography of neonates is performed.