ACGT-a comparative genomics tool

Bioinformatics. 2003 May 22;19(8):1039-40. doi: 10.1093/bioinformatics/btg121.

Abstract

Summary: ACGT (a comparative genomics tool) is a genomic DNA sequence comparison viewer and analyzer. It can read a pair of DNA sequences in GenBank, Embl or Fasta formats, with or without a comparison file, and provide users with many options to view and analyze the similarities between the input sequences. It is written in Java and can be run on Unix, Linux and Windows platforms.

Availability: The ACGT program is freely available with documentation and examples at website: http://db.systemsbiology.net/projects/local/mhc/acgt/

Publication types

  • Comparative Study
  • Evaluation Study
  • Validation Study

MeSH terms

  • Computer Graphics
  • Conserved Sequence / genetics
  • Database Management Systems*
  • Databases, Nucleic Acid*
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Bacterial / genetics
  • Genomics / methods
  • Haemophilus influenzae / genetics
  • Information Storage and Retrieval / methods
  • Pasteurella multocida / genetics
  • Sequence Alignment / methods*
  • Sequence Analysis, DNA / methods
  • Sequence Homology
  • Software*
  • User-Computer Interface*