The transcription factor CCAAT-binding factor CBF/NF-Y regulates the proximal promoter activity in the human alpha 1(XI) collagen gene (COL11A1)

J Biol Chem. 2003 Aug 29;278(35):32763-70. doi: 10.1074/jbc.M305599200. Epub 2003 Jun 12.

Abstract

We have characterized the proximal promoter region of the human COL11A1 gene. Transient transfection assays indicate that the segment from -199 to +1 is necessary for the activation of basal transcription. Electrophoretic mobility shift assays (EMSAs) demonstrated that the ATTGG sequence, within the -147 to -121 fragment, is critical to bind nuclear proteins in the proximal COL11A1 promoter. We demonstrated that the CCAAT binding factor (CBF/NF-Y) bound to this region using an interference assay with consensus oligonucleotides and a supershift assay with specific antibodies in an EMSA. In a chromatin immunoprecipitation assay and EMSA using DNA-affinity-purified proteins, CBF/NF-Y proteins directly bound this region in vitro and in vivo. We also showed that four tandem copies of the CBF/NF-Y-binding fragment produced higher transcriptional activity than one or two copies, whereas the absence of a CBF/NF-Y-binding fragment suppressed the COL11A1 promoter activity. Furthermore, overexpression of a dominant-negative CBF-B/NF-YA subunit significantly inhibited promoter activity in both transient and stable cells. These results indicate that the CBF/NF-Y proteins regulate the transcription of COL11A1 by directly binding to the ATTGG sequence in the proximal promoter region.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • CCAAT-Binding Factor / physiology*
  • Cell Nucleus / metabolism
  • Chromatin / metabolism
  • Collagen / genetics*
  • Collagen / metabolism*
  • Collagen Type XI / genetics*
  • Collagen Type XI / metabolism*
  • DNA / metabolism
  • Gene Deletion
  • Gene Expression Regulation*
  • Genes, Dominant
  • Humans
  • Luciferases / metabolism
  • Models, Genetic
  • Molecular Sequence Data
  • Plasmids / metabolism
  • Precipitin Tests
  • Promoter Regions, Genetic*
  • Protein Binding
  • Recombinant Fusion Proteins / metabolism
  • Transcription Factors / physiology*
  • Transcription, Genetic
  • Transfection
  • Tumor Cells, Cultured

Substances

  • CCAAT-Binding Factor
  • Chromatin
  • Collagen Type XI
  • Recombinant Fusion Proteins
  • Transcription Factors
  • nuclear factor Y
  • Collagen
  • DNA
  • Luciferases