Genetic variation in rotavirus serotype 4 subtypes

Virology. 1992 May;188(1):362-8. doi: 10.1016/0042-6822(92)90766-i.

Abstract

Serotype 4 rotavirus strains have been classified into two antigenic "subtypes" by a solid phase immune electron microscopy technique in which cross-absorbed animal polyclonal immune sera are used as the source of antibodies. The sequences of the gene encoding the outer capsid glycoprotein VP7 from a single serotype 4 rotavirus field strain identified as subtype A ("ST3-like") and from three field strains identified as subtype B ("VA70-like") were determined. A comparison of the deduced amino acid sequences indicated that 15 amino acid residues were divergent between subtypes but were conserved within a subtype. Three of these 15 amino acid residues (at positions 96, 212, and 217) were located in regions of the VP7 that have been defined as serotype-specific antigenic sites. These data suggest that VP7 subtype differences may result from critical amino acid substitutions within an immunodominant serotype 4-specific antigenic site. Whether these differences are an important mechanism in the epidemiology of rotaviruses requires further investigation.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antigens, Viral*
  • Base Sequence
  • Blotting, Northern
  • Capsid / chemistry
  • Capsid / genetics
  • Capsid Proteins*
  • Genetic Variation*
  • Humans
  • Molecular Sequence Data
  • Rotavirus / classification
  • Rotavirus / genetics*
  • Rotavirus Infections / microbiology
  • Sequence Alignment
  • Serotyping

Substances

  • Antigens, Viral
  • Capsid Proteins
  • VP7 protein, Rotavirus

Associated data

  • GENBANK/M86490
  • GENBANK/M86832
  • GENBANK/M86833
  • GENBANK/M86834