Physical properties of the Escherichia coli transcription termination factor rho. 1. Association states and geometry of the rho hexamer

Biochemistry. 1992 Jan 14;31(1):111-21. doi: 10.1021/bi00116a017.

Abstract

To function as a DNA-RNA helicase in rho-dependent transcript termination, six genetically identical subunits of the Escherichia coli transcription termination protein rho must first assemble into a hexameric complex. To help determine the quaternary structure of this complex, we have studied the association equilibria of the rho protomers. Sedimentation equilibrium, sedimentation velocity, diffusion, X-ray scattering, and neutron-scattering data have been combined to create a "phase diagram" of the association states of this protein as a function of protein concentration and ionic environment. The results show that rho exists predominantly as a hexamer under approximately physiological conditions and that this hexamer is in equilibrium with both lower and higher states of association that may also have physiological relevance. Small-angle X-ray scattering measurements and theoretical calculations indicate that the rho hexamer has a radius of gyration of 50 +/- 3 A. The radius of gyration measured by small-angle neutron scattering in 2H2O is 47 +/- 3 A. These scattering studies also support earlier models of rho as a planar hexagon which have been developed on the basis of electron microscopy. In the following paper in this issue [Geiselmann, J., Seifried, S. E., Yager, T. D., Liang, C., & von Hippel, P. H. (1992)], these results are combined with information on symmetry, subunit interactions, and packing geometry to obtain a model of the quaternary structure of the functional rho hexamer.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA / metabolism
  • Diffusion
  • Escherichia coli / chemistry*
  • Ligands
  • Mathematics
  • Models, Molecular
  • Molecular Weight
  • Multienzyme Complexes / metabolism
  • Oligonucleotides / metabolism
  • Protein Binding
  • Protein Conformation
  • RNA / metabolism
  • Rho Factor / chemistry*
  • Rho Factor / genetics
  • Rho Factor / isolation & purification
  • Salts / metabolism
  • Scattering, Radiation
  • Structure-Activity Relationship
  • Transcription, Genetic
  • Ultracentrifugation
  • X-Ray Diffraction

Substances

  • Ligands
  • Multienzyme Complexes
  • Oligonucleotides
  • Rho Factor
  • Salts
  • RNA
  • DNA