Crystal structure of a platelet-agglutinating factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus)

Biochem J. 2004 Mar 1;378(Pt 2):399-407. doi: 10.1042/BJ20031507.

Abstract

Platelet glycoprotein Ib (GPIb)-binding proteins (GPIb-BPs) from snake venoms are usually C-type lectins, which target specific sites of GPIbalpha and elicit distinct effects on platelets. In the present paper, we report a tetrameric platelet-agglutinating factor (molecular mass 121.1 kDa), termed mucrocetin, purified from the venom of Taiwan habu (Trimeresurus mucrosquamatus ). Mucrocetin is a GPIbalpha agonist with a binding site distinct from that of flavocetin-A (a snake venom GPIbalpha antagonist) on GPIbalpha, in spite of the high sequence identity (94.6%) between the two venom lectins. The crystal structure of mucrocetin was solved and refined to 2.8 A (1 A=0.1 nm) resolution, which shows an interesting crystal packing of six-layer cylinders of doughnut-shaped molecules. The four alphabeta heterodimers are arranged in an unusual square-shaped ring stabilized by four interdimer 'head-to-tail' disulphide bridges. Detailed structural comparison between mucrocetin and flavocetin-A suggests that their disparate platelet effects are probably attributable to different charge distributions on the putative concave binding surface. A unique positively charged patch on the binding surface of mucrocetin, formed by Lys102, Lys108, Lys109 and Arg123 in the alpha-subunit coupled with Lys22, Lys102, Lys116 and Arg117 in the beta-subunit, appears to be the primary determinant of its platelet-agglutinating activity. Conceivably, this interesting venom factor may provide a useful tool to study platelet agglutination by binding to the GPIb-IX-V complex.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Carrier Proteins / chemistry
  • Carrier Proteins / pharmacology
  • Cloning, Molecular
  • Crotalid Venoms / chemistry*
  • Crotalid Venoms / genetics
  • Crotalid Venoms / pharmacology
  • Crystallography, X-Ray
  • Humans
  • Models, Molecular*
  • Molecular Sequence Data
  • Platelet Aggregation / drug effects*
  • Platelet Aggregation Inhibitors / chemistry
  • Platelet Aggregation Inhibitors / pharmacology
  • Platelet Glycoprotein GPIb-IX Complex / agonists*
  • Platelet Glycoprotein GPIb-IX Complex / antagonists & inhibitors
  • Reptilian Proteins*
  • Sequence Homology, Amino Acid
  • Trimeresurus*
  • Viper Venoms / chemistry*
  • Viper Venoms / genetics
  • Viper Venoms / pharmacology

Substances

  • Carrier Proteins
  • Crotalid Venoms
  • Platelet Aggregation Inhibitors
  • Platelet Glycoprotein GPIb-IX Complex
  • Reptilian Proteins
  • Viper Venoms
  • flavocetin A
  • mucrocetin protein, Trimeresurus mucrosquamatus

Associated data

  • GENBANK/AY390533
  • GENBANK/AY390534
  • PDB/1V4L