Relationship between intramolecular hydrogen bonding and solvent accessibility of side-chain donors and acceptors in proteins

FEBS Lett. 2003 Nov 20;554(3):389-93. doi: 10.1016/s0014-5793(03)01189-x.

Abstract

This study shows that intramolecular hydrogen bonding in proteins depends on the accessibility of donors and acceptors to water molecules. The frequency of occurrence of H-bonded side chains in proteins is inversely proportional to the solvent accessibility of their donors and acceptors. Estimates of the notional free energy of hydrogen bonding suggest that intramolecular hydrogen-bonding interactions of buried and half-buried donors and acceptors can contribute favorably to the stability of a protein, whereas those of solvent-exposed polar atoms become less favorable or unfavorable.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemistry*
  • Crystallography, X-Ray
  • Hydrogen Bonding
  • Nitrogen / chemistry
  • Oxygen / chemistry
  • Proteins / chemistry*
  • Solvents / chemistry*
  • Thermodynamics
  • Water / chemistry

Substances

  • Amino Acids
  • Proteins
  • Solvents
  • Water
  • Nitrogen
  • Oxygen