Physical and functional interaction of the archaeal single-stranded DNA-binding protein SSB with RNA polymerase

Nucleic Acids Res. 2004 Feb 10;32(3):1065-74. doi: 10.1093/nar/gkh259. Print 2004.

Abstract

Archaeal transcription utilizes a complex multisubunit RNA polymerase and the basal transcription factors TBP and TF(II)B, closely resembling its eukaryal counterpart. We have uncovered a tight physical and functional interaction between RNA polymerase and the single-stranded DNA-binding protein SSB in Sulfolobus solfataricus. SSB stimulates transcription from promoters in vitro under TBP-limiting conditions and supports transcription in the absence of TBP. SSB also rescues transcription from repression by reconstituted chromatin. We demonstrate the potential for promoter melting by SSB, suggesting a plausible basis for the stimulation of transcription. This stimulation requires both the single-stranded DNA-binding domain and the acidic C-terminal tail of the SSB. The tail forms a stable interaction with RNA polymerase. These data reveal an unexpected role for single-stranded DNA-binding proteins in transcription in archaea.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Archaeal Proteins / chemistry
  • Archaeal Proteins / metabolism
  • Archaeal Proteins / physiology*
  • Chromatin / genetics
  • DNA, Single-Stranded / metabolism
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism
  • DNA-Binding Proteins / physiology*
  • DNA-Directed RNA Polymerases / metabolism*
  • Gene Expression Regulation, Archaeal*
  • Models, Genetic
  • Nucleic Acid Conformation
  • Promoter Regions, Genetic
  • Repressor Proteins / metabolism
  • Sulfolobus / enzymology
  • Sulfolobus / genetics*
  • TATA-Box Binding Protein / metabolism
  • Transcription Factor TFIIB / metabolism
  • Transcriptional Activation

Substances

  • Archaeal Proteins
  • Chromatin
  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Repressor Proteins
  • Sso10b protein, Sulfolobus solfataricus
  • TATA-Box Binding Protein
  • Transcription Factor TFIIB
  • DNA-Directed RNA Polymerases