DLEU2 encodes an antisense RNA for the putative bicistronic RFP2/LEU5 gene in humans and mouse

Genes Chromosomes Cancer. 2004 Aug;40(4):285-97. doi: 10.1002/gcc.20046.

Abstract

Our group previously identified two novel genes, RFP2/LEU5 and DLEU2, within a 13q14.3 genomic region of loss seen in various malignancies. However, no specific inactivating mutations were found in these or other genes in the vicinity of the deletion, suggesting that a nonclassical tumor-suppressor mechanism may be involved. Here, we present data showing that the DLEU2 gene encodes a putative noncoding antisense RNA, with one exon directly overlapping the first exon of the RFP2/LEU5 gene in the opposite orientation. In addition, the RFP2/LEU5 transcript can be alternatively spliced to produce either several monocistronic transcripts or a putative bicistronic transcript encoding two separate open-reading frames, adding to the complexity of the locus. The finding that these gene structures are conserved in the mouse, including the putative bicistronic RFP2/LEU5 transcript as well as the antisense relationship with DLEU2, further underlines the significance of this unusual organization and suggests a biological function for DLEU2 in the regulation of RFP2/LEU5.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing / genetics
  • Animals
  • Base Composition / genetics
  • Cell Line, Tumor
  • Chromosomes / genetics
  • DNA-Binding Proteins / genetics*
  • Gene Expression Profiling / methods
  • Gene Expression Regulation / genetics
  • Gene Expression Regulation / physiology
  • Genes / genetics*
  • Genes, Overlapping
  • HeLa Cells
  • Humans
  • In Situ Hybridization / methods
  • Kidney / cytology
  • Kidney / embryology
  • Mice
  • Open Reading Frames / genetics
  • Proteins / genetics*
  • Proteins / physiology
  • RNA, Antisense / genetics*
  • RNA, Long Noncoding
  • RNA, Messenger / genetics
  • RNA, Untranslated / genetics
  • Transferases
  • Tumor Suppressor Proteins / genetics*

Substances

  • DLEU2 lncRNA, human
  • DNA-Binding Proteins
  • Proteins
  • RNA, Antisense
  • RNA, Long Noncoding
  • RNA, Messenger
  • RNA, Untranslated
  • TRIM13 protein, human
  • Tumor Suppressor Proteins
  • Dleu2 protein, mouse
  • Transferases