ProViz: protein interaction visualization and exploration

Florian Iragne; Macha Nikolski; Bertrand Mathieu; David Auber; David Sherman

doi:10.1093/bioinformatics/bth494

ProViz: protein interaction visualization and exploration

Bioinformatics. 2005 Jan 15;21(2):272-4. doi: 10.1093/bioinformatics/bth494. Epub 2004 Sep 3.

Authors

Florian Iragne¹, Macha Nikolski, Bertrand Mathieu, David Auber, David Sherman

Affiliation

¹ LaBRI UMR 5800, Université Bordeaux 1 351 cours de la Libération, 33405 Talence Cedex, France.

PMID: 15347570
DOI: 10.1093/bioinformatics/bth494

Abstract

ProViz is a tool for the visualization of protein-protein interaction networks, developed by the IntAct European project. It provides facilities for navigating in large graphs and exploring biologically relevant features, and adopts emerging standards such as GO and PSI-MI.

Availability: ProViz is available under the GPL and may be freely downloaded. Source code and binaries are available at http://cbi.labri.fr/eng/proviz.htm

Contact: david.sherman@labri.fr

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computer Graphics
Databases, Protein
Documentation / methods*
Gene Expression Regulation / physiology*
Information Storage and Retrieval / methods
Models, Biological*
Protein Interaction Mapping / methods*
Signal Transduction / physiology*
Software*
Transcription Factors / metabolism*
User-Computer Interface*

Substances

Transcription Factors