Duganella violaceinigra sp. nov., a novel mesophilic bacterium isolated from forest soil

Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1811-1814. doi: 10.1099/ijs.0.63141-0.

Abstract

A mesophilic bacterium, designated strain YIM 31327T, was isolated from a forest soil sample collected from Yunnan Province, China, and was then investigated using a polyphasic approach. The strain grew optimally at 28-30 degrees C and pH 7.2. The cells were Gram-negative, short, rod-shaped, motile and non-spore-forming with flagella. The major ubiquinone was Q-8 and the cellular fatty acids were C(16 : 0) and C(12 : 0). The DNA G + C content of strain YIM 31327T was 62.8 mol%. Phylogenetic analysis revealed that strain YIM 31327T was a member of the beta-Proteobacteria, being most closely related to Duganella zoogloeoides, with which it exhibited less than 96 % 16S rRNA gene sequence similarity. On the basis of the phenotypic and genotypic differences between strain YIM 31327T and D. zoogloeoides, a novel species, Duganella violaceinigra sp. nov., is proposed, with YIM 31327T (= CIP 108077T = KCTC 12193T) as the type strain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Fatty Acids / analysis
  • Genes, rRNA / genetics
  • Hydrogen-Ion Concentration
  • Microscopy
  • Microscopy, Electron
  • Molecular Sequence Data
  • Movement
  • Oxalobacteraceae / classification*
  • Oxalobacteraceae / cytology
  • Oxalobacteraceae / isolation & purification*
  • Oxalobacteraceae / physiology
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Spores, Bacterial
  • Temperature
  • Ubiquinone / analysis

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Ubiquinone

Associated data

  • GENBANK/AY376163