Fluorous affinity purification of oligonucleotides

J Org Chem. 2005 Sep 2;70(18):7114-22. doi: 10.1021/jo050795y.

Abstract

[structure: see text] Nucleoside phosphoramidites bearing a fluorous dimethoxytrityl (FDMT) group were used to synthesize fluorous-tagged oligonucleotides, which were subjected to solid-phase extraction using a pH-stable fluorinated adsorbent. On-column detritylation afforded the purified oligonucleotides. The fluorous affinity purification method offers one-pass loading without ammonia removal, high selectivity for the removal of failure sequences, high recoveries (typically 70-100%), and the ability to purify long oligonucleotides (e.g., 50-100-mers).

MeSH terms

  • Affinity Labels / chemistry*
  • Base Sequence
  • Chromatography, High Pressure Liquid
  • Fluorine / chemistry*
  • Molecular Sequence Data
  • Oligonucleotides / isolation & purification*

Substances

  • Affinity Labels
  • Oligonucleotides
  • Fluorine