Butyrate- and propionate-degrading syntrophs from permanently cold marine sediments in Skan Bay, Alaska, and description of Algorimarina butyrica gen. nov., sp. nov

FEMS Microbiol Lett. 2006 Sep;262(1):107-14. doi: 10.1111/j.1574-6968.2006.00380.x.

Abstract

Two anaerobic, psychrotolerant, syntrophic strains were enriched from permanently cold, shallow anoxic marine sediments in Skan Bay, Alaska. One strain, AK-B(T), oxidized butyrate syntrophically and was isolated in defined coculture with a H(2)-using methanogen or in a dixenic coculture that also contained an acetate-scavenging methanogen. The other enrichment culture syntrophically oxidized propionate. The growth of these syntrophic cultures was very slow: approximately 1 year for cocultures of strain AK-B(T) to form colonies and >1 year for the propionate-oxidizing enrichment to form colonies. Neither culture grew axenically when supplied with the catabolic substrates crotonate, pyruvate, malate, or sulfate plus butyrate or propionate. Strain AK-B(T) catabolized iso-butyrate in syntrophic coculture but did not catabolize valerate or caproate. Phylogenetic analyses of the 16S rRNA gene sequence suggested that strain AK-B(T) was only distantly related to cultivated sulfate-reducing bacteria, and that this strain represented a new genus. We propose Algorimarina butyrica, with strain AK-B(T) (=OCM 842(T)), as the type strain. This report is the first description of psychrotolerant as well as marine butyrate--and propionate-oxidizing syntrophic organisms.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alaska
  • Bacteria, Anaerobic / classification
  • Bacteria, Anaerobic / cytology
  • Bacteria, Anaerobic / isolation & purification
  • Bacteria, Anaerobic / metabolism*
  • Biodegradation, Environmental
  • Butyrates / metabolism*
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Geologic Sediments / microbiology*
  • Microscopy, Electron, Transmission
  • Molecular Sequence Data
  • Phylogeny
  • Propionates / metabolism*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Water Microbiology

Substances

  • Butyrates
  • DNA, Bacterial
  • DNA, Ribosomal
  • Propionates
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/AY851292