Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors

Mol Cell. 2007 Mar 9;25(5):751-64. doi: 10.1016/j.molcel.2007.01.027.

Abstract

Elongation factor G (EF-G) catalyzes tRNA translocation on the ribosome. Here a cryo-EM reconstruction of the 70S*EF-G ribosomal complex at 7.3 A resolution and the crystal structure of EF-G-2*GTP, an EF-G homolog, at 2.2 A resolution are presented. EF-G-2*GTP is structurally distinct from previous EF-G structures, and in the context of the cryo-EM structure, the conformational changes are associated with ribosome binding and activation of the GTP binding pocket. The P loop and switch II approach A2660-A2662 in helix 95 of the 23S rRNA, indicating an important role for these conserved bases. Furthermore, the ordering of the functionally important switch I and II regions, which interact with the bound GTP, is dependent on interactions with the ribosome in the ratcheted conformation. Therefore, a network of interaction with the ribosome establishes the active GTP conformation of EF-G and thus facilitates GTP hydrolysis and tRNA translocation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Guanosine Triphosphate / metabolism*
  • Guanylyl Imidodiphosphate / metabolism
  • Models, Molecular
  • Peptide Elongation Factor G / chemistry*
  • Peptide Elongation Factor G / metabolism*
  • Peptide Elongation Factor G / ultrastructure
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Ribosomes / chemistry*
  • Ribosomes / metabolism*
  • Ribosomes / ultrastructure
  • Structure-Activity Relationship
  • Thermus thermophilus / metabolism*

Substances

  • Peptide Elongation Factor G
  • Guanylyl Imidodiphosphate
  • Guanosine Triphosphate