[Analysis of the distribution of the nucleotide sequence and electrostatic potential of the Escherichia coli genome]

Biofizika. 2007 Mar-Apr;52(2):223-7.
[Article in Russian]

Abstract

The oligonucleotide composition of the E. coli genome and its sigma70-specific promoters has been analyzed. The promoter DNA was shown to contain mainly AT-rich hexanucleotides having functionally important physical properties such as the ability to form easily melting sites and induce the bending of the double helix. A comparative analysis of the electrostatic characteristics of hexanucleotides within the whole sequence of the E. coli genome and its promoter regions was made. Hexanucleotides possessing a more electronegative surrounding were found to predominate in the nucleotide sequence of the promoter DNA.

MeSH terms

  • Base Sequence / genetics
  • DNA-Directed RNA Polymerases / metabolism
  • Escherichia coli / genetics*
  • Escherichia coli / physiology*
  • Genome, Bacterial / genetics*
  • Membrane Potentials*
  • Promoter Regions, Genetic / genetics*
  • Sequence Analysis, DNA
  • Sigma Factor / metabolism
  • Static Electricity

Substances

  • Sigma Factor
  • RNA polymerase sigma 70
  • DNA-Directed RNA Polymerases