Fourmidable: a database for ant genomics

BMC Genomics. 2009 Jan 6:10:5. doi: 10.1186/1471-2164-10-5.

Abstract

Background: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants.

Description: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available.

Conclusion: Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Ants / genetics*
  • Computational Biology / methods
  • Databases, Genetic*
  • Expressed Sequence Tags
  • Genomics / methods*
  • Oligonucleotide Array Sequence Analysis