Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer

Nat Genet. 2009 Sep;41(9):986-90. doi: 10.1038/ng.429. Epub 2009 Aug 2.

Abstract

We conducted a two-stage genome-wide association study of pancreatic cancer, a cancer with one of the lowest survival rates worldwide. We genotyped 558,542 SNPs in 1,896 individuals with pancreatic cancer and 1,939 controls drawn from 12 prospective cohorts plus one hospital-based case-control study. We conducted a combined analysis of these groups plus an additional 2,457 affected individuals and 2,654 controls from eight case-control studies, adjusting for study, sex, ancestry and five principal components. We identified an association between a locus on 9q34 and pancreatic cancer marked by the SNP rs505922 (combined P = 5.37 x 10(-8); multiplicative per-allele odds ratio 1.20; 95% confidence interval 1.12-1.28). This SNP maps to the first intron of the ABO blood group gene. Our results are consistent with earlier epidemiologic evidence suggesting that people with blood group O may have a lower risk of pancreatic cancer than those with groups A or B.

Publication types

  • Letter

MeSH terms

  • ABO Blood-Group System / genetics*
  • Alleles
  • Case-Control Studies
  • Chromosomes, Human, Pair 9
  • Cohort Studies
  • Female
  • Gene Frequency
  • Genetic Predisposition to Disease*
  • Genetic Variation*
  • Genome-Wide Association Study*
  • Genotype
  • Haplotypes
  • Humans
  • Introns
  • Linkage Disequilibrium
  • Logistic Models
  • Male
  • Odds Ratio
  • Pancreatic Neoplasms / genetics*
  • Polymorphism, Single Nucleotide
  • Prospective Studies
  • Risk Factors
  • United States

Substances

  • ABO Blood-Group System