A one-step real-time reverse transcription-polymerase chain reaction detection of classical swine fever virus using a minor groove binding probe

Vet Res Commun. 2010 Apr;34(4):359-69. doi: 10.1007/s11259-010-9363-8. Epub 2010 Apr 22.

Abstract

The aim of this study was to develop a one-step real-time reverse transcription-polymerase chain reaction assay using the minor groove binding probe (MGB rRT-PCR) for rapid and quantitative detection of classical swine fever virus (CSFV). The method, which targets the 5'-nontranslated region (5'NTR) of the viral genome, detected all CSFV isolate tested, but not heterologous pathogens. Using an in vitro transcript of the 5'NTR as a quantitative standard for the CSFV genome copy number, the assay had a detection limit of 10 copies/reaction, and the standard curve had a linear range from 10 to 10(7) copies/reaction, with good reproducibility. As determined by an end-point dilution comparison, in most case, the sensitivity of the MGB rRT-PCR was approximately 10-fold higher than that of virus isolation and the rRT-PCR using the standard Taqman probe (standard rRT-PCR). The agreement between the MGB rRT-PCR and standard rRT-PCR, or virus isolation was 93.3% and 76.7%, respectively, when detecting 261 field samples. Due to its rapidity, high specificity and sensitivity, the MGB rRT-PCR assay provides a valuable tool for diagnosis and molecular studies of CSFV biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / genetics*
  • Animals
  • Base Sequence
  • Classical Swine Fever Virus / genetics*
  • Classical Swine Fever Virus / isolation & purification
  • Conserved Sequence
  • DNA Primers
  • Genome, Viral
  • Kidney / virology
  • Muscle, Skeletal / virology
  • Nasal Mucosa / virology
  • Palatine Tonsil / virology
  • Pestivirus Infections / diagnosis
  • Pestivirus Infections / veterinary*
  • RNA, Viral / genetics
  • Reverse Transcriptase Polymerase Chain Reaction / methods
  • Reverse Transcriptase Polymerase Chain Reaction / veterinary*
  • Species Specificity
  • Spleen / virology
  • Swine / classification
  • Swine / genetics
  • Transcription, Genetic

Substances

  • 5' Untranslated Regions
  • DNA Primers
  • RNA, Viral