Contact intervals, survival analysis of epidemic data, and estimation of R(0)

Biostatistics. 2011 Jul;12(3):548-66. doi: 10.1093/biostatistics/kxq068. Epub 2010 Nov 11.

Abstract

We argue that the time from the onset of infectiousness to infectious contact, which we call the "contact interval," is a better basis for inference in epidemic data than the generation or serial interval. Since contact intervals can be right censored, survival analysis is the natural approach to estimation. Estimates of the contact interval distribution can be used to estimate R(0) in both mass-action and network-based models. We apply these methods to 2 data sets from the 2009 influenza A(H1N1) pandemic.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Basic Reproduction Number*
  • Computer Simulation
  • Data Interpretation, Statistical*
  • Epidemics*
  • Humans
  • Influenza A Virus, H1N1 Subtype / isolation & purification
  • Influenza, Human / epidemiology
  • Influenza, Human / virology
  • Survival Analysis