Actinoallomurus radicium sp. nov., isolated from the roots of two plant species

Int J Syst Evol Microbiol. 2012 Feb;62(Pt 2):295-298. doi: 10.1099/ijs.0.029181-0. Epub 2011 Mar 18.

Abstract

Three strains, K08-0182(T), K08-0178 and K08-0195 were isolated from the paste of ground plant roots collected in Kanagawa Prefecture, Japan. These strains contained meso-diaminopimelic acid and lysine as the diamino acids in cell-wall peptidoglycan, and MK-9(H(6)) and MK-9(H(8)) as the predominant menaquinones. The G+C contents of the DNA were 72-73 mol%. Taken together, these characteristics combined with 16S rRNA gene sequence analyses revealed that the isolated strains belong to the genus Actinoallomurus. DNA-DNA hybridization values showed that the three strains belonged to a novel species of the genus Actinoallomurus. Therefore strains K08-0182(T), K08-0178 and K08-0195 are proposed as representatives of a novel species, Actinoallomurus radicium sp. nov. The type strain is K08-0182(T) ( = DSM 45523(T) = NBRC 107678(T) = JCM 17294(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / chemistry
  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification*
  • Bacterial Typing Techniques
  • Base Composition
  • Cell Wall / chemistry
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Diaminopimelic Acid / analysis
  • Genes, rRNA
  • Japan
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Peptidoglycan / analysis
  • Plant Roots / microbiology*
  • Plants / classification
  • Plants / microbiology*
  • Poaceae / microbiology*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Species Specificity
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Peptidoglycan
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • Diaminopimelic Acid

Associated data

  • GENBANK/AB578855
  • GENBANK/AB578856
  • GENBANK/AB578857