Feed-forward microprocessing and splicing activities at a microRNA-containing intron

PLoS Genet. 2011 Oct;7(10):e1002330. doi: 10.1371/journal.pgen.1002330. Epub 2011 Oct 20.

Abstract

The majority of mammalian microRNA (miRNA) genes reside within introns of protein-encoding and non-coding genes, yet the mechanisms coordinating primary transcript processing into both mature miRNA and spliced mRNA are poorly understood. Analysis of melanoma invasion suppressor miR-211 expressed from intron 6 of melastatin revealed that microprocessing of miR-211 promotes splicing of the exon 6-exon 7 junction of melastatin by a mechanism requiring the RNase III activity of Drosha. Additionally, mutations in the 5' splice site (5'SS), but not in the 3'SS, branch point, or polypyrimidine tract of intron 6 reduced miR-211 biogenesis and Drosha recruitment to intron 6, indicating that 5'SS recognition by the spliceosome promotes microprocessing of miR-211. Globally, knockdown of U1 splicing factors reduced intronic miRNA expression. Our data demonstrate novel mutually-cooperative microprocessing and splicing activities at an intronic miRNA locus and suggest that the initiation of spliceosome assembly may promote microprocessing of intronic miRNAs.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Introns / genetics*
  • Melanocytes / cytology
  • MicroRNAs / genetics*
  • Open Reading Frames / genetics
  • Proteins / genetics
  • Proteins / metabolism
  • RNA Processing, Post-Transcriptional
  • RNA Splice Sites / genetics
  • RNA Splicing*
  • RNA, Small Interfering / genetics
  • RNA-Binding Proteins
  • Ribonuclease III / genetics
  • Ribonuclease III / metabolism
  • Ribonucleoprotein, U1 Small Nuclear / genetics
  • Ribonucleoprotein, U1 Small Nuclear / metabolism
  • Spliceosomes / genetics
  • TRPM Cation Channels / genetics
  • TRPM Cation Channels / metabolism

Substances

  • DGCR8 protein, human
  • MIRN211 microRNA, human
  • MicroRNAs
  • Proteins
  • RNA Splice Sites
  • RNA, Small Interfering
  • RNA-Binding Proteins
  • Ribonucleoprotein, U1 Small Nuclear
  • TRPM Cation Channels
  • TRPM1 protein, human
  • DROSHA protein, human
  • Ribonuclease III