Protein characterization by LC-MS/MS may be required for the DNA identification of a fusion hemoglobin: the example of Hb P-Nilotic

J Chromatogr B Analyt Technol Biomed Life Sci. 2012 Feb 1:883-884:172-6. doi: 10.1016/j.jchromb.2011.10.017. Epub 2011 Oct 25.

Abstract

DNA analysis is currently the easiest way to identify a hemoglobin variant in most cases. Nevertheless, in case of complex gene rearrangements, mass spectrometry studies may be required to orientate the DNA diagnosis. The present report shows the use of mass spectrometry techniques prior to DNA analysis for the identification of the rare P-Nilotic fusion hemoglobin. Complete protein analysis is performed by liquid chromatography-tandem mass spectrometry on the abnormal globin chain isolated by reversed-phase liquid chromatography.

MeSH terms

  • Amino Acid Sequence
  • Chromatography, Liquid / methods*
  • Chromatography, Reverse-Phase
  • DNA / analysis*
  • DNA / genetics
  • Gene Fusion
  • Gene Rearrangement
  • Genetic Variation
  • Hemoglobinopathies / blood
  • Hemoglobinopathies / genetics
  • Hemoglobins, Abnormal / analysis
  • Hemoglobins, Abnormal / genetics*
  • Humans
  • Molecular Sequence Data
  • Polymerase Chain Reaction
  • Reproducibility of Results
  • Sequence Alignment
  • Tandem Mass Spectrometry / methods*

Substances

  • Hemoglobins, Abnormal
  • hemoglobin P-Nilotic
  • DNA