Isolation and functional characterisation of the genes encoding Δ(8)-sphingolipid desaturase from Brassica rapa

J Genet Genomics. 2012 Jan;39(1):47-59. doi: 10.1016/j.jgg.2011.12.002. Epub 2011 Dec 30.

Abstract

Δ(8)-Sphingolipid desaturase is the key enzyme that catalyses desaturation at the C8 position of the long-chain base of sphingolipids in higher plants. There have been no previous studies on the genes encoding Δ(8)-sphingolipid desaturases in Brassica rapa. In this study, four genes encoding Δ(8)-sphingolipid desaturases from B. rapa were isolated and characterised. Phylogenetic analyses indicated that these genes could be divided into two groups: BrD8A, BrD8C and BrD8D in group I, and BrD8B in group II. The two groups of genes diverged before the separation of Arabidopsis and Brassica. Though the four genes shared a high sequence similarity, and their coding desaturases all located in endoplasmic reticulum, they exhibited distinct expression patterns. Heterologous expression in Saccharomyces cerevisiae revealed that BrD8A/B/C/D were functionally diverse Δ(8)-sphingolipid desaturases that catalyse different ratios of the two products 8(Z)- and 8(E)-C18-phytosphingenine. The aluminium tolerance of transgenic yeasts expressing BrD8A/B/C/D was enhanced compared with that of control cells. Expression of BrD8A in Arabidopsis changed the ratio of 8(Z):8(E)-C18-phytosphingenine in transgenic plants. The information reported here provides new insights into the biochemical functional diversity and evolutionary relationship of Δ(8)-sphingolipid desaturase in plants and lays a foundation for further investigation of the mechanism of 8(Z)- and 8(E)-C18-phytosphingenine biosynthesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aluminum / toxicity
  • Amino Acid Sequence
  • Arabidopsis / genetics
  • Arabidopsis / metabolism
  • Biocatalysis
  • Brassica rapa / enzymology*
  • Brassica rapa / genetics*
  • Evolution, Molecular
  • Gene Dosage
  • Gene Expression Regulation, Plant
  • Intracellular Space / enzymology
  • Molecular Sequence Data
  • Nicotiana / cytology
  • Nicotiana / genetics
  • Oxidoreductases / genetics*
  • Oxidoreductases / metabolism
  • Plants, Genetically Modified
  • Promoter Regions, Genetic
  • Protein Transport
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Sequence Homology, Nucleic Acid
  • Sphingosine / analogs & derivatives
  • Sphingosine / biosynthesis

Substances

  • Aluminum
  • Oxidoreductases
  • sphingolipid desaturase
  • phytosphingosine
  • Sphingosine