Viral categorization and discovery in human circulation by transcriptome sequencing

Biochem Biophys Res Commun. 2013 Jul 5;436(3):525-9. doi: 10.1016/j.bbrc.2013.05.139. Epub 2013 Jun 11.

Abstract

Serum is the most common and easily accessible patient specimen in a minimally invasive manner. As a biological resource, RNA in serum has been less explored for its clinical utilization due to prevailing concerns regarding its high degradable nature. In the current study, however, we have documented the use of human serum RNA for viral categorization and discovery through transcriptome sequencing and analysis using well-curated databases and advanced bioinformatic tools. Such an integrated approach may have an immediate application in any clinical situations concerning with viral etiology.

Keywords: Multiple displacement amplification; Next-generation sequencing; Viral discovery.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Computational Biology
  • DNA, Complementary / genetics
  • Gene Expression Profiling / methods*
  • Hepacivirus / genetics
  • Hepacivirus / isolation & purification*
  • Hepatitis C, Chronic / diagnosis
  • Humans
  • Open Reading Frames
  • RNA, Viral / blood*
  • RNA, Viral / genetics
  • Sensitivity and Specificity
  • Transcriptome

Substances

  • DNA, Complementary
  • RNA, Viral