Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment

Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130332. doi: 10.1098/rstb.2013.0332.

Abstract

We propose a method for deducing time-resolved structural changes in uncrystallized biomolecules in solution. The method relies on measuring the angular correlations of the intensities, when averaged over a large number of diffraction patterns from randomly oriented biomolecules in solution in a liquid solvent. The experiment is somewhat like a pump-probe version of an experiment on small angle X-ray scattering, except that the data expected by the algorithm are not just the radial variation of the averaged intensities. The differences of these correlation functions as measured from a photoexcited and dark structure enable the direct calculation of the difference electron density with a knowledge of only the dark structure. We exploit a linear relation we derive between the difference in these correlation functions and the difference electron density, applicable for small structural changes.

Keywords: X-ray free-electron laser; proteins; time-resolved.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms*
  • Electrons*
  • Lasers*
  • Models, Theoretical*
  • Molecular Conformation*
  • Time Factors
  • X-Ray Diffraction / methods*