The structure of SAV1646 from Staphylococcus aureus belonging to a new `ribosome-associated' subfamily of bacterial proteins

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):332-7. doi: 10.1107/S1399004714025619. Epub 2015 Jan 23.

Abstract

The crystal structure of the SAV1646 protein from the pathogenic microorganism Staphylococcus aureus has been determined at 1.7 Å resolution. The 106-amino-acid protein forms a two-layer sandwich with α/β topology. The protein molecules associate as dimers in the crystal and in solution, with the monomers related by a pseudo-twofold rotation axis. A sequence-homology search identified the protein as a member of a new subfamily of yet uncharacterized bacterial `ribosome-associated' proteins with at least 13 members to date. A detailed analysis of the crystal protein structure along with the genomic structure of the operon containing the sav1646 gene allowed a tentative functional model of this protein to be proposed. The SAV1646 dimer is assumed to form a complex with ribosomal proteins L21 and L27 which could help to complete the assembly of the large subunit of the ribosome.

Keywords: SAV1646; Staphylococcus aureus; ribosome-associated protein subfamily; α/β protein.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray
  • Humans
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Multimerization
  • Ribosomal Proteins / metabolism
  • Sequence Alignment
  • Staphylococcal Infections / microbiology
  • Staphylococcus aureus / chemistry*
  • Staphylococcus aureus / metabolism

Substances

  • Bacterial Proteins
  • Ribosomal Proteins
  • ribosomal proteins L27
  • ribosomal protein L21

Associated data

  • PDB/2P92