Genome sequence of Pseudomonas parafulva CRS01-1, an antagonistic bacterium isolated from rice field

Qunen Liu; Yingxin Zhang; Ning Yu; Zhenzhen Bi; Aike Zhu; Xiaodeng Zhan; Weixun Wu; Ping Yu; Daibo Chen; Shihua Cheng; Liyong Cao

doi:10.1016/j.jbiotec.2015.03.017

Genome sequence of Pseudomonas parafulva CRS01-1, an antagonistic bacterium isolated from rice field

J Biotechnol. 2015 Jul 20:206:89-90. doi: 10.1016/j.jbiotec.2015.03.017. Epub 2015 Mar 31.

Authors

Qunen Liu¹, Yingxin Zhang², Ning Yu¹, Zhenzhen Bi¹, Aike Zhu¹, Xiaodeng Zhan², Weixun Wu², Ping Yu², Daibo Chen², Shihua Cheng³, Liyong Cao⁴

Affiliations

¹ National Rice Improvement Center, China National Rice Research Institute, Hangzhou 311400, China.
² National Rice Improvement Center, China National Rice Research Institute, Hangzhou 311400, China; Zhejiang Key Laboratory of Super Rice Research, Hangzhou 311400, China.
³ National Rice Improvement Center, China National Rice Research Institute, Hangzhou 311400, China; Zhejiang Key Laboratory of Super Rice Research, Hangzhou 311400, China. Electronic address: shcheng@mail.hz.zj.cn.
⁴ National Rice Improvement Center, China National Rice Research Institute, Hangzhou 311400, China; Zhejiang Key Laboratory of Super Rice Research, Hangzhou 311400, China. Electronic address: Caoliyong1966@163.com.

PMID: 25835951
DOI: 10.1016/j.jbiotec.2015.03.017

Abstract

Pseudomonas parafulva (formerly known as Pseudomonas fulva) is an antagonistic bacterium against several rice bacterial and fungal diseases. The total genome size of P. parafulva CRS01-1 is 5,087,619 bp with 4389 coding sequences (CDSs), 77 tRNAs, and 7 rRNAs. The annotated full genome sequence of the P. parafulva CRS01-1 strain might shed light on its role as an antagonistic bacterium.

Keywords: Biocontrol; Biofilm; Secondary metabolism; Type III secretion system.

MeSH terms

Genome, Bacterial / genetics*
Molecular Sequence Data
Oryza / microbiology*
Pest Control, Biological
Pseudomonas / genetics*

Associated data

GENBANK/CP009747