Helicobacter apri sp. nov., isolated from wild boars

Int J Syst Evol Microbiol. 2016 Aug;66(8):2876-2882. doi: 10.1099/ijsem.0.001071. Epub 2016 Apr 11.

Abstract

Three isolates (A19T, C21 and F12) with spiral-shaped cells and one bipolar sheathed flagellum were obtained from gastric mucosa and caecal contents of three different wild boars (Sus scrofa) and subjected to a polyphasic taxonomic study. A genus-specific PCR showed that these isolates belonged to the genus Helicobacter. Phylogenetic analysis based on 16S rRNA, 60-kDa heat-shock protein (HSP60) and atpA genes demonstrated they formed a novel lineage within this genus. Pairwise 16S rRNA, HSP60 and atpA gene sequence comparisons of the three isolates revealed 99.7, 99.4 and 99.9 % similarity, respectively, among the three isolates; the 16S rRNA gene of isolate A19T shared 98.5 % sequence similarity with its nearest validly named neighbouring species, Helicobacter mastomyrinus (to the type strain MIT 97-5577T). The taxonomic uniqueness of the wild boar isolates was confirmed by protein analysis performed by matrix-assisted laser desorption/ionization time-of-flight MS and by a distinctive biochemical profile. These data indicated that isolates A19T, C21 and F12 represent a novel taxon, for which the name Helicobacter apri sp. nov. is proposed, with isolate A19T (=DSM 28990T=LMG 28471T) as the type strain.

MeSH terms

  • Animals
  • Bacterial Typing Techniques
  • Base Composition
  • Chaperonin 60 / genetics
  • DNA, Bacterial / genetics
  • Gastric Mucosa / microbiology*
  • Genes, Bacterial
  • Helicobacter / classification*
  • Helicobacter / genetics
  • Helicobacter / isolation & purification
  • Italy
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sus scrofa / microbiology*

Substances

  • Chaperonin 60
  • DNA, Bacterial
  • RNA, Ribosomal, 16S