Differential expression of long non-coding RNAs in hyperoxia-induced bronchopulmonary dysplasia

Cell Biochem Funct. 2016 Jul;34(5):299-309. doi: 10.1002/cbf.3190. Epub 2016 May 3.

Abstract

Bronchopulmonary dysplasia (BPD) is a common complication of premature birth that seriously affects the survival rate and quality of life among preterm neonates. Long non-coding RNAs (lncRNAs) have been implicated in many human diseases. However, the role of lncRNAs in the pathogenesis of BPD remains poorly understood. Here, we exposed neonatal C57BL/6J mice to 95% concentrations of ambient oxygen and established a mouse lung injury model that mimicked human BPD. Next, we compared lncRNA and messenger RNA (mRNA) expression profiles between BPD and normal lung tissues using a high-throughput mouse lncRNA + mRNA array system. Compared with the control group, 882 lncRNAs were upregulated, and 887 lncRNAs were downregulated in BPD lung tissues. We validated some candidate BPD-associated lncRNAs by real-time quantitative reverse-transcription polymerase chain reaction analysis in eight pairs of BPD and normal lung tissues. Gene ontology, pathway and bioinformatics analyses revealed that a downregulated lncRNA, namely AK033210, associated with tenascin C may be involved in the pathogenesis of BPD. To the best of our knowledge, our study is the first to reveal differential lncRNA expression in BPD, which provides a foundation for further understanding of the molecular mechanism of BPD development. Copyright © 2016 John Wiley & Sons, Ltd.

Keywords: bronchopulmonary dysplasia; hyperoxia; long non-coding RNA; microarray analysis.

MeSH terms

  • Animals
  • Animals, Newborn
  • Biomarkers / metabolism
  • Bronchopulmonary Dysplasia / etiology*
  • Bronchopulmonary Dysplasia / genetics*
  • Computational Biology
  • Disease Models, Animal
  • Female
  • Gene Expression Profiling*
  • Gene Expression Regulation*
  • Gene Ontology
  • Hyperoxia / complications*
  • Lung / metabolism
  • Lung / pathology
  • Mice, Inbred C57BL
  • Oligonucleotide Array Sequence Analysis
  • RNA, Long Noncoding / genetics*
  • RNA, Long Noncoding / metabolism
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Reproducibility of Results
  • Signal Transduction / genetics
  • Survival Analysis
  • Tenascin / genetics
  • Tenascin / metabolism

Substances

  • Biomarkers
  • RNA, Long Noncoding
  • RNA, Messenger
  • Tenascin