The molecular and clinical features of dengue during outbreak in Jambi, Indonesia in 2015

Pathog Glob Health. 2016 May;110(3):119-29. doi: 10.1080/20477724.2016.1184864. Epub 2016 May 23.

Abstract

Dengue is hyperendemic in Indonesia. In 2015, reported cases of dengue fever doubled those of 2014 in the Jambi municipality of Sumatra. We examined viral aetiology and its relationship with disease outcome in Jambi. Dengue-suspected patients' sera were collected and NS1 detection and IgM/IgG serology were performed. Dengue virus (DENV) serotyping was performed using real-time RT-PCR. Envelope genes were sequenced to determine the genotypes of DENV. Clinical, haematologic, and demographic data were recorded. Of 210 dengue-suspected patients, 107 were confirmed. The disease manifested as Dengue Fever (62%), Dengue Haemorrhagic Fever (36%), and Dengue Shock Syndrome (2%). The serotypes of 94 DENV were determined. All DENV serotypes were detected with DENV-1 as the predominant serotype (66%). Genotypically, the DENV-1 viruses belong to Genotype I, DENV-2 was of Cosmopolitan genotype, DENV-3 as Genotype I, and DENV-4 belonged to Genotype II. Comparison with historical data revealed serotype predominance switched from DENV-3 to DENV-1, and the replacement of Genotype IV of DENV-1 with Genotype I. In summary, DENV-1 predominated during the 2015 dengue outbreak in Jambi. The full spectrum of dengue disease occurred and was characterized by a switch in predominant serotypes.

Keywords: Dengue; Genotype; Indonesia; Jambi; Serotype.

MeSH terms

  • Amino Acid Sequence
  • Dengue / epidemiology*
  • Dengue / physiopathology
  • Dengue / virology*
  • Dengue Virus / chemistry
  • Dengue Virus / genetics*
  • Dengue Virus / isolation & purification*
  • Disease Outbreaks
  • Endemic Diseases
  • Epidemiological Monitoring
  • Evolution, Molecular
  • Female
  • Genes, Viral
  • Genotype
  • Humans
  • Indonesia / epidemiology
  • Male
  • Real-Time Polymerase Chain Reaction
  • Serotyping