Transcriptome profiling analysis of rare minnow (Gobiocypris rarus) gills after waterborne cadmium exposure

Comp Biochem Physiol Part D Genomics Proteomics. 2016 Sep:19:120-128. doi: 10.1016/j.cbd.2016.05.003. Epub 2016 May 27.

Abstract

Rare minnow (Gobiocypris rarus) is a widely used experimental fish in risk assessments of aquatic pollutants in China. Cadmium (Cd) is one of the most toxic heavy metals in the world; however, few studies have used fish gills, a multi-functional organ. In this study, we characterized the differential expression of adult female rare minnow gills after sub-chronic waterborne Cd (75μg/L CdCl2) exposure for 35d. A total of 452 genes (209 up-regulated and 243 down-regulated) were identified by gene expression profiling using RNA-Seq before and after treatment. Of these differentially expressed genes, 75, 21, and 54 differentially expressed genes are related to ion transport, oxidation-reduction processes, and the immune response, respectively. The results of GO and KEGG enrichment analyses, together with the altered transcript levels of major histocompatibility complex (MHC) class I and class II molecules and the significant increases in the levels of serum tumor necrosis factor α (TNF-α), interleukin 1β (IL1β) and nuclear factor-κB (NF-κB), indicated a disruption of the immune system, particularly the induction of inflammation and autoimmunity. The significant down-regulation of coagulation factor XIII A1 polypeptide (F13A1), tripartite motif-containing protein 21 (TRIM21), and Golgi-associated plant pathogenesis-related protein (GAPr) during both acute (≤96h) and sub-chronic (35d) waterborne Cd exposure, as well as their dosage dependence, suggested that these three genes could be used as sensitive biomarkers for aquatic Cd risk assessment.

Keywords: Cadmium; Digital gene expression; Inflammation; Rare minnow (Gobiocypris rarus); Transcriptome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cadmium / pharmacology*
  • Computational Biology
  • Cyprinidae / genetics*
  • Cyprinidae / growth & development
  • Female
  • Gene Expression Profiling*
  • Gene Expression Regulation / drug effects*
  • Genomics
  • Gills / drug effects
  • Gills / growth & development
  • Gills / metabolism*
  • High-Throughput Nucleotide Sequencing / methods
  • Transcriptome / drug effects*
  • Water Pollutants, Chemical / pharmacology*

Substances

  • Water Pollutants, Chemical
  • Cadmium