Crystal structure of Zika virus NS2B-NS3 protease in complex with a boronate inhibitor

Science. 2016 Jul 29;353(6298):503-5. doi: 10.1126/science.aag2419. Epub 2016 Jul 7.

Abstract

The ongoing Zika virus (ZIKV) outbreak is linked to severe neurological disorders. ZIKV relies on its NS2B/NS3 protease for polyprotein processing; hence, this enzyme is an attractive drug target. The 2.7 angstrom; crystal structure of ZIKV protease in complex with a peptidomimetic boronic acid inhibitor reveals a cyclic diester between the boronic acid and glycerol. The P2 4-aminomethylphenylalanine moiety of the inhibitor forms a salt-bridge with the nonconserved Asp(83) of NS2B; ion-pairing between Asp(83) and the P2 residue of the substrate likely accounts for the enzyme's high catalytic efficiency. The unusual dimer of the ZIKV protease:inhibitor complex seen in the crystal may provide a model for assemblies formed at high local concentrations of protease at the endoplasmatic reticulum membrane, the site of polyprotein processing.

MeSH terms

  • Antiviral Agents / chemistry*
  • Antiviral Agents / pharmacology
  • Boronic Acids / chemistry*
  • Boronic Acids / pharmacology
  • Crystallography, X-Ray
  • Dipeptides / chemistry*
  • Dipeptides / pharmacology
  • Glycerol / chemistry
  • Humans
  • Phenylalanine / analogs & derivatives
  • Phenylalanine / chemistry
  • Protease Inhibitors / chemistry*
  • Protease Inhibitors / pharmacology
  • RNA Helicases / antagonists & inhibitors
  • RNA Helicases / chemistry
  • Serine Endopeptidases / chemistry
  • Viral Nonstructural Proteins / antagonists & inhibitors
  • Viral Nonstructural Proteins / chemistry*
  • Zika Virus / drug effects
  • Zika Virus / enzymology*

Substances

  • Antiviral Agents
  • Boronic Acids
  • Dipeptides
  • NS2B protein, flavivirus
  • NS3 protein, flavivirus
  • Protease Inhibitors
  • Viral Nonstructural Proteins
  • cn-716
  • 4-aminomethylphenylalanine
  • Phenylalanine
  • Serine Endopeptidases
  • RNA Helicases
  • Glycerol