Genetic disruption of the KLF1 gene to overexpress the γ-globin gene using the CRISPR/Cas9 system

J Gene Med. 2016 Oct;18(10):294-301. doi: 10.1002/jgm.2928.

Abstract

Background: β-thalassemia comprises a major group of human genetic disorders involving a decrease in or an end to the normal synthesis of the β-globin chains of hemoglobin. KLF1 is a key regulatory molecule involved in the γ- to β-globin gene switching process directly inducing the expression of the β-globin gene and indirectly repressing γ-globin. The present study aimed to investigate the ability of an engineered CRISPR/Cas9 system with respect to disrupting the KLF1 gene to inhibit the γ- to β-hemoglobin switching process in K562 cells.

Methods: We targeted three sites on the KLF1 gene, two of which are upstream of codon 288 in exon 2 and the other site being in exon 3.

Results: The average indel percentage in the cells transfected with CRISPR a, b and c was approximately 24%. Relative quantification was performed for the assessment of γ-globin expression. The levels of γ-globin mRNA on day 5 of differentiation were 8.1-, 7.7- and 1.8-fold in the cells treated with CRISPR/Cas9 a, b and c, respectively,compared to untreated cells. The measurement of HbF expression levels confirmed the same results.

Conclusions: The findings obtained in the present study support the induction of an indel mutation in the KLF1 gene leading to a null allele. As a result, the effect of KLF1 on the expression of BCL11A is decreased and its inhibitory effect on γ-globin gene expression is removed. Application of CRISPR technology to induce an indel in the KLF1 gene in adult erythroid progenitors may provide a method for activating fetal hemoglobin expression in individuals with β-thalassemia or sickle cell disease.

Keywords: CRISPR/Cas9; KLF1 gene; β-thalassemia; γ-globin.

MeSH terms

  • Base Sequence
  • CRISPR-Cas Systems*
  • Gene Expression Regulation, Neoplastic
  • Gene Targeting / methods*
  • Humans
  • INDEL Mutation
  • K562 Cells
  • Kruppel-Like Transcription Factors / genetics*
  • Kruppel-Like Transcription Factors / metabolism
  • Models, Genetic
  • beta-Globins / genetics*
  • beta-Globins / metabolism

Substances

  • Kruppel-Like Transcription Factors
  • beta-Globins
  • erythroid Kruppel-like factor