Circulating tumor DNA profiling by next generation sequencing reveals heterogeneity of crizotinib resistance mechanisms in a gastric cancer patient with MET amplification

Oncotarget. 2017 Apr 18;8(16):26281-26287. doi: 10.18632/oncotarget.15457.

Abstract

Crizotinib has been used to counter MET gene amplification in a number of different human malignancies. Transient response to crizotinib in MET-amplified gastric cancer has been reported, but the mechanisms of resistance are not well studied. Here, we reported a stage IV gastric cancer patient with high levels of MET amplification. The implementation of crizotinib treatment led to significant symptomatic improvement in the first 2 months, but was followed by rapid disease progression. Periodic mutation profiling of patient's circulating tumor DNA (ctDNA) by next generation sequencing (NGS) revealed a number of genetic alterations including re-occurrence of MET amplification, multiple secondary MET mutations, a dramatic increase of FGFR2 gene relative copy number as well as mutations in other downstream and bypassing elements, which may collectively related to the patient's cancer progression. Our results illustrate the complex and heterogeneous molecular mechanisms for crizotinib resistance in this patient, and demonstrate the great potential of ctDNA profiling for treatment decision-making and prognosis in clinical practice.

Keywords: MET; circulating tumor DNA; crizotinib; drug resistance; next generation sequencing.

MeSH terms

  • Adult
  • Cell Line, Tumor
  • Circulating Tumor DNA*
  • Crizotinib
  • Drug Resistance, Neoplasm / genetics*
  • Female
  • Gene Amplification*
  • Gene Expression Profiling
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Models, Biological
  • Models, Molecular
  • Mutation
  • Neoplasm Staging
  • Positron Emission Tomography Computed Tomography
  • Protein Conformation
  • Protein Kinase Inhibitors / pharmacology
  • Protein Kinase Inhibitors / therapeutic use
  • Proto-Oncogene Proteins c-met / chemistry
  • Proto-Oncogene Proteins c-met / genetics*
  • Pyrazoles / pharmacology*
  • Pyrazoles / therapeutic use
  • Pyridines / pharmacology*
  • Pyridines / therapeutic use
  • Stomach Neoplasms / diagnosis
  • Stomach Neoplasms / drug therapy
  • Stomach Neoplasms / genetics*

Substances

  • Circulating Tumor DNA
  • Protein Kinase Inhibitors
  • Pyrazoles
  • Pyridines
  • Crizotinib
  • Proto-Oncogene Proteins c-met