A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity

New Phytol. 2017 Nov;216(3):798-813. doi: 10.1111/nph.14727. Epub 2017 Aug 14.

Abstract

In plants, perception of vegetation proximity by phytochrome photoreceptors activates a transcriptional network that implements a set of responses to adapt to plant competition, including elongation of stems or hypocotyls. In Arabidopsis thaliana, the homeodomain-leucine zipper (HD-Zip) transcription factor ARABIDOPSIS THALIANA HOMEOBOX 4 (ATHB4) regulates this and other responses, such as leaf polarity. To better understand the shade regulatory transcriptional network, we have carried out structure-function analyses of ATHB4 by overexpressing a series of truncated and mutated forms and analyzing three different responses: hypocotyl response to shade, transcriptional activity and leaf polarity. Our results indicated that ATHB4 has two physically separated molecular activities: that performed by HD-Zip, which is involved in binding to DNA-regulatory elements, and that performed by the ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR-associated amphiphilic repression (EAR)-containing N-terminal region, which is involved in protein-protein interaction. Whereas both activities are required to regulate leaf polarity, DNA-binding activity is not required for the regulation of the seedling responses to plant proximity, which indicates that ATHB4 works as a transcriptional cofactor in the regulation of this response. These findings suggest that transcription factors might employ alternative mechanisms of action to regulate different developmental processes.

Keywords: ARABIDOPSIS THALIANA HOMEOBOX 4 (ATHB4); Arabidopsis thaliana; DNA-binding activity; ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR-associated amphiphilic repression (EAR) motif; homeodomain-leucine zipper; shade avoidance syndrome; transcription factors; transcriptional cofactors.

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis / physiology*
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism*
  • DNA, Plant / metabolism
  • Gene Expression Regulation, Plant
  • Homeodomain Proteins / chemistry
  • Homeodomain Proteins / genetics
  • Homeodomain Proteins / metabolism*
  • Hypocotyl / physiology
  • Nuclear Localization Signals / genetics
  • Nuclear Localization Signals / metabolism
  • Plant Leaves / physiology
  • Plants, Genetically Modified
  • Protein Interaction Domains and Motifs
  • Repressor Proteins / genetics
  • Repressor Proteins / metabolism
  • Seedlings / physiology
  • Transcription Factors / chemistry
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*

Substances

  • Arabidopsis Proteins
  • DNA, Plant
  • Homeodomain Proteins
  • Nuclear Localization Signals
  • Repressor Proteins
  • Transcription Factors
  • homeobox-leucine zipper protein ATHB-4, Arabidopsis

Associated data

  • GENBANK/At4g16780
  • GENBANK/At2g44910
  • GENBANK/At5g47370
  • GENBANK/At4g38850