In silico structural modeling of multiple epigenetic marks on DNA

Bioinformatics. 2018 Jan 1;34(1):41-48. doi: 10.1093/bioinformatics/btx516.

Authors

Konrad Krawczyk^{1

2}, Samuel Demharter³, Bernhard Knapp^{2

4}, Charlotte M Deane⁵, Peter Minary³

Affiliations

¹ Department of Computer Science, Oxford University, OX1 3QD Oxford, UK.
² Department of Statistics, Oxford University, OX1 3LB Oxford, UK.
³ Department of Computer Science, Oxford University, OX1?3QD Oxford, UK.
⁴ Faculty of Medicine and Health Sciences, International University of Catalonia, Barcelona, Spain.
⁵ Department of Statistics, Oxford University, OX1?3LB Oxford, UK.

PMID: 29028987
DOI: 10.1093/bioinformatics/btx516

Abstract

Availability and implementation: The code together with examples and tutorials are available from http://www.cs.ox.ac.uk/mosaics.

Contact: peter.minary@cs.ox.ac.uk.

Supplementary information: Supplementary data are available at Bioinformatics online.

© The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computational Biology / methods
Computer Simulation*
DNA / chemistry
DNA / metabolism
DNA Methylation*
Epigenomics / methods*
Models, Molecular*
Nucleic Acid Conformation*
Software*

Substances

DNA