Yellow fever virus RNA is usually detected in blood of infected humans. We detected virus RNA in urine and semen samples from a convalescent patient. A complete virus genome was sequenced for an isolate from a urine sample. This virus had a South American I genotype and unique synapomorphic changes.
Keywords: Brazil; YFV; convalescent patient; flavivirus; semen; urine; vector-borne infections; virus diagnostics; viruses; yellow fever; yellow fever virus.