Interfering with HuR-RNA Interaction: Design, Synthesis and Biological Characterization of Tanshinone Mimics as Novel, Effective HuR Inhibitors

J Med Chem. 2018 Feb 22;61(4):1483-1498. doi: 10.1021/acs.jmedchem.7b01176. Epub 2018 Jan 31.

Abstract

The human antigen R (HuR) is an RNA-binding protein known to modulate the expression of target mRNA coding for proteins involved in inflammation, tumorigenesis, and stress responses and is a valuable drug target. We previously found that dihydrotanshinone-I (DHTS, 1) prevents the association of HuR with its RNA substrate, thus imparing its function. Herein, inspired by DHTS structure, we designed and synthesized an array of ortho-quinones (tanshinone mimics) using a function-oriented synthetic approach. Among others, compound 6a and 6n turned out to be more effective than 1, showing a nanomolar Ki and disrupting HuR binding to RNA in cells. A combined approach of NMR titration and molecular dynamics (MD) simulations suggests that 6a stabilizes HuR in a peculiar closed conformation, which is incompatible with RNA binding. Alpha screen and RNA-electrophoretic mobility shift assays (REMSA) data on newly synthesized compounds allowed, for the first time, the generation of structure activity relationships (SARs), thus providing a solid background for the generation of highly effective HuR disruptors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Abietanes
  • Cell Line
  • Drug Design
  • ELAV-Like Protein 1 / metabolism*
  • Humans
  • Molecular Dynamics Simulation
  • Molecular Mimicry
  • Protein Binding / drug effects*
  • Quinones / chemical synthesis
  • Quinones / pharmacology*
  • RNA, Messenger / metabolism*
  • RNA-Binding Proteins / metabolism
  • Structure-Activity Relationship

Substances

  • Abietanes
  • ELAV-Like Protein 1
  • Quinones
  • RNA, Messenger
  • RNA-Binding Proteins
  • tanshinone