Genotyping and Whole-Genome Sequencing to Identify Tuberculosis Transmission to Pediatric Patients in British Columbia, Canada, 2005-2014

J Infect Dis. 2018 Aug 24;218(7):1155-1163. doi: 10.1093/infdis/jiy278.

Abstract

Background: Tuberculosis (TB) in children is often an indicator of recent transmission. Genotyping and whole-genome sequencing (WGS) can enhance pediatric TB investigations by confirming or refuting transmission events.

Methods: Mycobacterium tuberculosis isolates from all pediatric patients <18 years with culture-confirmed TB in British Columbia (BC) from 2005 to 2014 (n = 49) were genotyped by Mycobacterial Interspersed Repetitive Units-Variable Number Tandem Repeat (MIRU-VNTR) and compared with adult isolates. Genotypically clustered cases underwent WGS. Clinical, demographic, and contact data were reviewed for each case.

Results: Twenty-three children were Canadian-born, 7 to Canadian-born parents (CBP) and 16 to foreign-born parents (FBP). Of the 26 foreign-born children, all were born in Asia (81%) or Africa (19%). Using molecular and epidemiological data, we determined that 15 children had acquired their infection within BC, and household transmission explained all 7 Canadian-born (FBP) children that acquired TB locally. In contrast, 6 of 7 Canadian-born (CBP) children were exposed via a non-household community source. Eight Canadian-born (FBP) children acquired their infections through travel to their parents' place of birth. All but 1 of the foreign-born children acquired their infection outside of BC.

Conclusions: Genotyping and genomic data reveal that drivers of pediatric transmission vary according to a child's age, birthplace, and their parents' place of birth.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • British Columbia / epidemiology
  • Child
  • Child, Preschool
  • Demography
  • Female
  • Genotype
  • Genotyping Techniques
  • Humans
  • Male
  • Mycobacterium tuberculosis / genetics*
  • Phylogeny
  • Retrospective Studies
  • Tuberculosis / epidemiology
  • Tuberculosis / microbiology
  • Tuberculosis / transmission*
  • Whole Genome Sequencing

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