Differential toxicity of TAR DNA-binding protein 43 isoforms depends on their submitochondrial localization in neuronal cells

J Neurochem. 2018 Sep;146(5):585-597. doi: 10.1111/jnc.14465. Epub 2018 Aug 1.

Abstract

TAR DNA-binding protein 43 (TDP-43) is an RNA-binding protein and a major component of protein aggregates found in amyotrophic lateral sclerosis and several other neurodegenerative diseases. TDP-43 exists as a full-length protein and as two shorter forms of 25 and 35 kDa. Full-length mutant TDP-43s found in amyotrophic lateral sclerosis patients re-localize from the nucleus to the cytoplasm and in part to mitochondria, where they exert a toxic role associated with neurodegeneration. However, induction of mitochondrial damage by TDP-43 fragments is yet to be clarified. In this work, we show that the mitochondrial 35 kDa truncated form of TDP-43 is restricted to the intermembrane space, while the full-length forms also localize in the mitochondrial matrix in cultured neuronal NSC-34 cells. Interestingly, the full-length forms clearly affect mitochondrial metabolism and morphology, possibly via their ability to inhibit the expression of Complex I subunits encoded by the mitochondrial-transcribed mRNAs, while the 35 kDa form does not. In the light of the known differential contribution of the full-length and short isoforms to generate toxic aggregates, we propose that the presence of full-length TDP-43s in the matrix is a primary cause of mitochondrial damage. This in turn may cause oxidative stress inducing toxic oligomers formation, in which short TDP-43 forms play a major role.

Keywords: Complex I; TDP-43; amyotrophic lateral sclerosis; localization; mitochondria; neurodegeneration.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Transformed
  • Cell Nucleus / drug effects
  • Cell Nucleus / metabolism
  • Cell Nucleus / ultrastructure
  • Chaperonin 60 / genetics
  • Chaperonin 60 / metabolism
  • Cytosol / drug effects
  • Cytosol / metabolism
  • Cytosol / ultrastructure
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • DNA-Binding Proteins / ultrastructure
  • Electron Transport Complex IV / genetics
  • Electron Transport Complex IV / metabolism
  • Humans
  • Immunoprecipitation
  • Microscopy, Electron
  • Mitochondria / drug effects
  • Mitochondria / metabolism*
  • Mutation / drug effects
  • Mutation / genetics
  • Neurons* / drug effects
  • Neurons* / metabolism
  • Neurons* / ultrastructure
  • Oligonucleotides / toxicity*
  • Oxygen Consumption / drug effects
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism*
  • Protein Isoforms / ultrastructure
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA, Mitochondrial / genetics
  • RNA, Mitochondrial / metabolism
  • Subcellular Fractions / drug effects
  • Subcellular Fractions / metabolism
  • Transfection

Substances

  • Chaperonin 60
  • DNA-Binding Proteins
  • Oligonucleotides
  • Protein Isoforms
  • RNA, Messenger
  • RNA, Mitochondrial
  • TARDBP protein, human
  • mitochondrial messenger RNA
  • Electron Transport Complex IV