Priors-guided slice-wise adaptive outlier cleaning for arterial spin labeling perfusion MRI

Abstract

Background: Due to the low signal-to-noise-ratio (SNR) and unavoidable head motions, the pairwise subtraction perfusion signal extraction process in arterial spin labeling (ASL) perfusion MRI can produce extreme outliers.

Comparison with existing methods: We previously proposed an adaptive outlier cleaning (AOC) algorithm for ASL MRI. While it performed well even for clinical ASL data, two issues still exist. One is that if the reference is already dominated by noise, outlier cleaning using low correlation with the mean as a rejection criterion will actually reject the less noisy samples but keep the more noisy ones. The other is that it is sub-optimal to reject the entire outlier volumes without considering the quality of each constituent slices. To address both problems, a prior-guided and slice-wise AOC algorithm was proposed in this study.

New methods: The reference of AOC was initiated to be a pseudo cerebral blood flow (CBF) map based on prior knowledge and outlier rejection was performed at each slice. ASL data from the ADNI database (www.adni-info.org) were used to validate the method. Image preprocessing was performed using ASLtbx.

Results: The proposed method outperformed the original AOC and SCORE in terms of higher SNR and test-retest stability of the resultant CBF maps.

Conclusion: ASL CBF can be substantially improved using prior-guided and slice-wise outlier rejection. The proposed method will benefit the ever since increasing ASL user community for both clinical and scientific brain research.

Keywords: Arterial spin labeling; Cerebral blood flow; Outlier cleaning.