Genome-wide association study of the level of blood components in Pekin ducks

Genomics. 2020 Jan;112(1):379-387. doi: 10.1016/j.ygeno.2019.02.017. Epub 2019 Feb 25.

Abstract

Blood components are considered to reflect nutrient metabolism and immune activity in both humans and animals. In this study, we measured 12 blood components in Pekin ducks and performed genome-wide association analysis to identify the QTLs (quantitative trait locus) using a genotyping-by-sequencing strategy. A total of 54 QTLs were identified for blood components. One genome-wide significant QTL for alkaline phosphatase was identified within the intron-region of the OTOG gene (P = 1.31E-07). Moreover, 21 genome-wide significant SNPs for the level of serum cholinesterase were identified on six different scaffolds. In addition, for serum calcium, one genome-wide significant QTL was identified in the upstream region of gene RAB11B. These results provide new markers for functional studies in Pekin ducks, and several candidate genes were identified, which may provide additional insights into specific mechanisms for blood metabolism in ducks and their potential application for duck breeding programs.

Keywords: Blood components; GWAS; Pekin duck; Serum electrolytes; Serum lipid; Serum protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alkaline Phosphatase / blood
  • Animals
  • Biomarkers / blood
  • Calcium / blood
  • Cholinesterases / blood
  • Ducks / blood*
  • Ducks / genetics*
  • Female
  • Genome-Wide Association Study
  • Inheritance Patterns
  • Male
  • Phenotype
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci

Substances

  • Biomarkers
  • Cholinesterases
  • Alkaline Phosphatase
  • Calcium