Biochemical and Structural Characterization of XoxG and XoxJ and Their Roles in Lanthanide-Dependent Methanol Dehydrogenase Activity

Chembiochem. 2019 Sep 16;20(18):2360-2372. doi: 10.1002/cbic.201900184. Epub 2019 Aug 7.

Abstract

Lanthanide (Ln)-dependent methanol dehydrogenases (MDHs) have recently been shown to be widespread in methylotrophic bacteria. Along with the core MDH protein, XoxF, these systems contain two other proteins, XoxG (a c-type cytochrome) and XoxJ (a periplasmic binding protein of unknown function), about which little is known. In this work, we have biochemically and structurally characterized these proteins from the methyltroph Methylobacterium extorquens AM1. In contrast to results obtained in an artificial assay system, assays of XoxFs metallated with LaIII , CeIII , and NdIII using their physiological electron acceptor, XoxG, display Ln-independent activities, but the Km for XoxG markedly increases from La to Nd. This result suggests that XoxG's redox properties are tuned specifically for lighter Lns in XoxF, an interpretation supported by the unusually low reduction potential of XoxG (+172 mV). The X-ray crystal structure of XoxG provides a structural basis for this reduction potential and insight into the XoxG-XoxF interaction. Finally, the X-ray crystal structure of XoxJ reveals a large hydrophobic cleft and suggests a role in the activation of XoxF. These studies enrich our understanding of the underlying chemical principles that enable the activity of XoxF with multiple lanthanides in vitro and in vivo.

Keywords: cytochrome c; lanthanides; methanol dehydrogenase; rare earths; reduction potential.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alcohol Oxidoreductases / chemistry*
  • Bacterial Proteins / chemistry*
  • Cytochrome c Group / chemistry*
  • Enzyme Assays
  • Kinetics
  • Lanthanoid Series Elements / chemistry*
  • Methanol / chemistry
  • Methylobacterium extorquens / enzymology
  • Oxidation-Reduction
  • Periplasmic Binding Proteins / chemistry*
  • Rhodothermus / enzymology
  • Saccharomyces cerevisiae / enzymology

Substances

  • Bacterial Proteins
  • Cytochrome c Group
  • Lanthanoid Series Elements
  • Periplasmic Binding Proteins
  • Alcohol Oxidoreductases
  • alcohol dehydrogenase (acceptor)
  • Methanol

Supplementary concepts

  • Rhodothermus marinus